Publications Scientifiques

[ Article ] Molecular diversity of Scutellonema bradys populations from Benin, based on ITS1 rDNA and COI mtDNA

Date de soumission: 24-05-2018
Année de Publication: 2018
Entité/Laboratoire Laboratoire de Biologie Végétale (LBV)
Document type : Article
Discipline(s) : Agriculture & Agronomie
Titre Molecular diversity of Scutellonema bradys populations from Benin, based on ITS1 rDNA and COI mtDNA
Auteurs ETCHIHA AFOHA Sètondji Alban Paterne [1], AFFOKPON ANTOINE [2], WAEYENBERGE Lieven [3], de SUTTER Nancy [4], AGBANGLA CLÉMENT [5], DANSI ANAGONOU ALEXANDRE [6],
Journal: Tropical Plant Pathology
Catégorie Journal: Internationale
Impact factor: 0.81
Volume Journal: 4
DOI: 10.1007/s40858-018-0221-5
Resume In Benin, yam production continues to face numerous production constraints, including yield and quality reduction by Scutellonema bradys. Implementation of efficient management techniques against this pest requires an improved understanding, including at the molecular level, of the pest. The current study aimed at identifying the Scutellonema spp. associated with yam in Benin and investigating the phylogenetic relationships between populations. Nematodes of the genus Scutellonema were obtained from tubers exhibiting external dry rot symptoms. DNA was extracted from nematodes belonging to 138 populations collected from 49 fields from 29 villages. For 51 of these populations, both the ITS1 and COI regions could be amplified via PCR, sequenced, compared with available sequences in the NCBI database and were identified as S. bradys. Maximum likelihood was used to construct 60% consensus phylogenetic trees based on 51 sequences. This phylogenetic analysis did not reveal any genetic separation between populations by cultivar, village, cropping system nor by agroecological zone. Neither could any subgroups within S. bradys be separated, indicating that no subspecies were present. An earlier published species-specific primer set was verified with the DNA of the 51 sequences and was considered a reliable and rapid method for S. bradys identification
Mots clés Dioscorea spp., Diagnostics, Phylogenetic analysis, Sequence comparison, Species-specific primer, Yam nematode
Pages 1 - 10
Fichier

Publications par entité

  • Centre de Formation et de Recherche en matière de Population (CEFORP) (15)
  • Centre Interfacultaire de Formation et de Recherche en Environnement pour le Développement Durable (CIFRED) (18)
  • Chaire Internationale en Physique Mathématique et Applications (CIPMA-Chaire UNESCO) (16)
  • Ecole Nationale d'Administration et de Magistrature (ENAM) (44)
  • Ecole Nationle d'Economie Appliquée et de Management (72)
  • Ecole Normale Supérieure (23)
  • Ecole Polytechnique d'Abomey-Calavi (EPAC) (835)
  • Faculté de droit et de Science Politique (FADESP) (45)
  • Faculté des Lettres et Sciences Humaines (FLASH) (789)
  • Faculté des Sciences Agronomiques (1376)
  • Faculté des Sciences de la Santé (FSS) (1613)
  • Faculté des Sciences Economiques et de Gestion (FASEG) (136)
  • Faculté des Sciences et Techniques (FAST) (748)
  • Faculté des Sciences Humaines et Sociales (FASHS) (16)
  • Institut de Formation et de Recherche en Informatique (IFRI) (68)
  • Institut de Mathématiques et de Sciences Physiques (IMSP) (61)
  • Institut National de l'Eau (INE) (13)
  • INSTITUT NATIONAL DE LA JEUNESSE DE L’EDUCATION PHYSIQUE ET SPORT(INJEPS) (191)
  • Institut National des Métiers d'Art d'Archéologie et de la Culture (INMAAC) (4)
  • Institut Régional de Santé Publique (IRSP) (51)

Publications par sexe

  • Femme( 908 )
  • Homme (